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GenBankWriter does not use information in the original header #942 - #1042

Merged

josemduarte merged 31 commits into

biojava:masterfrom

jamesmorris:master

Oct 26, 2022

Merged

GenBankWriter does not use information in the original header #942#1042
josemduarte merged 31 commits into
biojava:masterfrom
jamesmorris:master

Commits on Oct 3, 2022
- Changes to fix a number of issues we have seen including empty locus
  
  jamesmorris
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  843c117
- Removed getLocusName()
  
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  ab221dc
- Merge branch 'biojava:master' into master
  jamesmorris
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  b68ba30
- updated the source of the accession to GENBANK
  
  jamesmorris
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  a4d7729
- Merge branch 'master' of https://github.com/jamesmorris/biojava-942.git
  
  jamesmorris
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  f0967f8
Commits on Oct 12, 2022
- added file to test for handling features containing joins
  
  jamesmorris
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  232372d
- Changed the file used for testing to one whith a much smaller sequence
  
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  a69e00a
- Handle partial locations in typical cases
  
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  21ec595
- maintain quotes around feature qualifiers if they are present
  
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  f27305e
- Updated test file
  
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  78a6e21
- updated the test data and tests
  
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  1443478
- updated test data and tests
  
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  72347b0
Commits on Oct 18, 2022
- Changed the 'name' set by the super() call to the Qualifier constructor
  
  jamesmorris
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  fc978f7
- Set if a db_xref qualifier requires quotes
  
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  df591fd
- When writing out feature qualifiers if they are db_xref values handle
  
  jamesmorris
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  4dcfbed
- Changes to improve the testGithub942 test
  
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  a44070c
- undone formatting changes
  
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  d872145
- more fixes to formatting
  
  jamesmorris
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  14def30
- added back empty line that was removed
  
  jamesmorris
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  63b5d85
- fixed formatting change
  
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  339ef92
- removed unused import
  
  jamesmorris
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  7f116c9
- reversing formatting changes made during development
  
  jamesmorris
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  2dac5d9
- More formatting changes
  
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  f3212e3
- more formatting changes
  
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  54640b7
- formatting changes
  
  jamesmorris
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  0737dfe
- formatting changes
  
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  199a50e
- formatting changes
  
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  6365b6b
- formatting changes
  
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  1df1734
Commits on Oct 19, 2022
- changed to use primitive boolean rather than the wrapper class
  
  jamesmorris
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  61b1412
- Changed comments to javadoc
  
  jamesmorris
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  95f5d20
Commits on Oct 26, 2022
- Merge branch 'biojava:master' into master
  jamesmorris
  authored
  26f3866

Commits

Commits on Oct 3, 2022

Commits on Oct 12, 2022

Commits on Oct 18, 2022

Commits on Oct 19, 2022

Commits on Oct 26, 2022